Analysis result

Once the analysis is complete, the result will be shown here:

Upload Instructions

1. Data format

Your simulation upload should be a csv file with the following columns; please make sure you use the exact same column names including capitalization:

• simID: an integer indicating simulation replicate.
  Note: we are not (yet) supporting analysis of more than one replicate, so please just use '0' for now.
• time: an integer indicating elapsed simulation time.
  Note: If your file contains more than 100 time steps (101 points), we will subsample 101 timepoints to keep analysis time manageable.
• cellID: a unique integer for every cell in the simulation.
• cellType: integer encoding for the celltype; there should be exactly two unique values in your data.
• x,y: coordinates of the cell, should be numeric.

To ensure your data imports smoothly, please make sure your CSV file uses commas as delimiters (rather than semicolons) and periods for decimal points (rather than commas).

2. Link a Github commit

We ask that you link each submission to the code that generated it. To this end, commit and push your updated code first to the workshop repository, after which you can click on your commit and provide its link in this submission portal.

3. Name and description

These will be mainly used to browse models in this portal, so the best descriptions are brief and only summarize key changes wrt the previous submission. Detailed descriptions are better placed in a 'model.md' file submitted to the Github repo.